Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRP | rs10887946 | chr10:91090086 | A/C | 1.0E-6 | 214 | 9.77 | 13.8 | 16.48 | KM Plot |
KIRP | rs10906106 | chr10:12287402 | C/G | 1.64E-5 | 210 | 9.07 | 17.03 | 15.63 | KM Plot |
KIRP | rs10922533 | chr1:89456659 | C/G | 9.97E-6 | 205 | 17.07 | 15.9 | 10.23 | KM Plot |
KIRP | rs10922542 | chr1:89485198 | C/T | 0.00023 | 210 | 16.97 | 14.83 | 10.23 | KM Plot |
KIRP | rs10922545 | chr1:89492201 | C/T | 1.77E-5 | 210 | 16.68 | 15.9 | 10.72 | KM Plot |
KIRP | rs10922548 | chr1:89494711 | T/C | 1.77E-5 | 210 | 16.68 | 15.9 | 10.72 | KM Plot |
KIRP | rs10922563 | chr1:89546803 | C/T | 2.17E-5 | 214 | 16.43 | 18.47 | 10 | KM Plot |
KIRP | rs10925965 | chr1:235708443 | C/A | 5.57E-5 | 210 | 13.38 | 17.2 | 15.07 | KM Plot |
KIRP | rs10936147 | chr3:99976007 | C/T | 8.89E-6 | 213 | 16.7 | 17.8 | 4.67 | KM Plot |
KIRP | rs10954911 | chr8:30036635 | A/C | 1.48E-6 | 210 | 15.88 | 14.87 | 0.33 | KM Plot |
KIRP | rs10994868 | chr10:63430196 | G/T | 0 | 210 | 18.02 | 9 | 1.17 | KM Plot |
KIRP | rs11000764 | chr10:75506864 | A/G | 0 | 210 | 16.47 | 15.07 | 2.47 | KM Plot |
KIRP | rs11000766 | chr10:75512952 | C/T | 0 | 212 | 16.45 | 14.95 | 2.47 | KM Plot |
KIRP | rs11000771 | chr10:75524458 | T/G | 0 | 211 | 16.43 | 14.95 | 2.47 | KM Plot |
KIRP | rs11000772 | chr10:75533988 | T/G | 0 | 213 | 16.5 | 15.07 | 2.47 | KM Plot |